{"repo":"zeiss-microscopy/OAD","free":true,"listed":false,"github":"https://github.com/zeiss-microscopy/OAD","clone":"git clone https://github.com/zeiss-microscopy/OAD.git","description":"Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.","language":"Jupyter Notebook","stars":170,"topics":["python","microscopy","scripting","automation","imaging","machine-learning","open-source","image-analysis","zen","zen-blue"],"license":"GPL-3.0","category":"workflow-automation","readme_excerpt":"- Open Application Development (OAD) - OAD - General Concept and Key Features - Links and References - Disclaimer Open Application Development (OAD) ZEN Blue is an open, flexible and powerful image acquisition platform that allows controlling a wide range of microscopes systems. Additionally it offers various tools to automate microscopy workflows including acquisition, image analysis and image processing tasks. In order to fulfill the request for automation the ZEN Blue platform offers various features and options, which are combined inside a concept called Open Application Development (OAD). Its main components are: - CZI image data format and its APIs - Python Scripting (OAD Simple API) using IronPython - ZEN API Control ZEN from the outside - Interfaces to ZEN (TCP-IP, COM, Extensions) - Experiment Feedback - Adaptive Acquisition with Online Image Analysis --- OAD - General Concept and Key Features - Open Application Development (OAD) uses powerful Python Scripts to simplify, customize and automate your workflows. - Analyze and Exchange data with applications like Fiji, Python, Knime, CellProfiler, Icy, MATLAB, Excel and … - API for reading and writing CZI image data using custom software - ZeissImgLib (.NET) to be used on Windows-based systems - libCZI (C++) and pylibCZIrw (python) for cross-platform applications - BioFormats (CZIReader) allow easy access to CZI files from many external applications using the BioFormats library - BioFormats Import as a module inside ZEN ","default_branch":null,"files":null,"tree":[],"storefront":"/r/zeiss-microscopy","claimed":false,"request_supported":{"post":"https://gitbuyer.com/r/zeiss-microscopy/OAD/request-supported","requests":0},"note":"indexed from public GitHub; nothing is for sale on this page. Clone it from GitHub. Paid listings live at /search."}