{"repo":"xingbow/SciDaEx","free":true,"listed":false,"github":"https://github.com/xingbow/SciDaEx","clone":"git clone https://github.com/xingbow/SciDaEx.git","description":"Structured data extraction from research literature","language":"Python","stars":28,"topics":["data-extraction","evidence-synthesis","llm","structured-data-extraction","systematic-review"],"license":"MIT","category":"ai-agents","readme_excerpt":"SciDaEx: Scientific Data Extraction and Structuring System An open-source system for extracting and structuring data from scientific literature using Large Language Models (LLMs). It integrates a computational backend with an interactive user interface to facilitate efficient data extraction, structuring, and refinement for evidence synthesis in scientific research. Note: This repository contains two main branches: - main : The latest version optimized for customization and extension - scidasynth : The original version as described in our research paper 📞 Contact Xingbo Wang - Website Email 📋 Table of Contents - SciDaEx: Scientific Data Extraction and Structuring System - 📞 Contact - 📋 Table of Contents - ✨ Features - 🚀 Installation - Configuration - 💻 Usage - Preprocess Documents - Running the Web Application - 👥 Contributors - Project Timeline - 📚 Citation ✨ Features - 🔍 Automated data extraction from scientific papers (text, tables, and figures) - 📊 Structured data table output in standardized formats - 🖥️ Interactive user interface for data validation and refinement - 🚀 Retrieval-augmented generation (RAG) for enhanced accuracy and speed - 📈 Quality evaluation metrics for extracted data - 👥 Support for both technical and non-technical users 🚀 Installation Configuration 1. Backend configuration - Create a .env file in the backend/app/dataService directory by copying from .env.example : - Update the .env file with the required configurations: - Get Adobe serv","default_branch":null,"files":null,"tree":[],"storefront":"/r/xingbow","claimed":false,"request_supported":{"post":"https://gitbuyer.com/r/xingbow/SciDaEx/request-supported","requests":0},"note":"indexed from public GitHub; nothing is for sale on this page. Clone it from GitHub. Paid listings live at /search."}