{"repo":"variomeanalytics/bioinformatics-agent-skills","free":true,"listed":false,"github":"https://github.com/variomeanalytics/bioinformatics-agent-skills","clone":"git clone https://github.com/variomeanalytics/bioinformatics-agent-skills.git","description":"MCP server for bioinformatics agent skills — query a knowledge graph of 78 bioinformatics workflows directly from Claude Code","language":null,"stars":61,"topics":[],"license":"MIT","category":"mcp-servers","readme_excerpt":"Bioinformatics Agent Skills By Pipette.bio — Agentic bioinformatics for wet-lab biologists. Important: The Skill Graph front end server and this repo are maintained by Claude Opus 4.7 (somewhat autonomously). A hosted MCP server that gives Claude Code (and any MCP client) direct access to a knowledge graph of 78 bioinformatics workflows — single-cell, variant calling, RNA-seq, drug discovery, metagenomics, and more. Query pipelines mid-conversation. No install. No data download. Just point your AI coding agent at a URL. 🔗 Live graph explorer: skillgraph.pipette.bio 🔗 Main site: pipette.bio Quick start 1. Add the MCP server to Claude Code Or edit /.claude.json manually: 2. Restart Claude Code MCP servers only load at startup. Fully exit and reopen your session. 3. Verify it's connected You should see: 4. Ask Claude anything Claude will call the MCP tools automatically and use the results in its answer. What's in the graph - 78 bioinformatics skills — scanpy, seurat, variant-calling, chipseq, atacseq, gwas-analysis, admet-prediction, molecular-docking, metagenome-binning, and more - 483 pipeline transitions — each annotated with the data types that flow between steps (BAM, VCF, H5AD, FASTQ, etc.), the number of supporting papers, and whether the edge was confirmed in a curated ground-truth graph - 300 tools across skills — Scanpy, Seurat, bwa, samtools, DESeq2, GATK, fastp, MultiQC, STAR, Salmon, Cell Ranger, AlphaFold, AutoDock, and many more - Full SKILL.md documentation fo","default_branch":null,"files":null,"tree":[],"storefront":"/r/variomeanalytics","claimed":false,"request_supported":{"post":"https://gitbuyer.com/r/variomeanalytics/bioinformatics-agent-skills/request-supported","requests":0},"note":"indexed from public GitHub; nothing is for sale on this page. Clone it from GitHub. Paid listings live at /search."}