{"repo":"typedb-osi/typedb-bio","free":true,"listed":false,"github":"https://github.com/typedb-osi/typedb-bio","clone":"git clone https://github.com/typedb-osi/typedb-bio.git","description":"TypeDB Bio: Biomedical Knowledge Graph","language":"Python","stars":90,"topics":["bioinformatics","knowledge-graph","knowledge-base","drug-discovery","biomedical","knowledge-discovery"],"license":null,"category":"productivity","readme_excerpt":"TypeDB Bio: Biomedical Knowledge Graph Overview Installation Datasets Examples How You Can Help Further Learning Compatibility note This repository has not been updated to be compatible with TypeDB 3.0. The TypeDB team welcomes any community members wishing to contribute this upgrade, and are happy to provide guidance and reviews of any steps in this direction Overview TypeDB Bio is an open source biomedical knowledge graph to enable research in areas such as drug discovery, precision medicine and drug repurposing. It provides biomedical researchers an intuitive way to query interconnected and heterogeneous biomedical data in one single place. For example, by querying for the virus SARS-CoV-2, we can find the associated human protein, proteasome subunit alpha type-2 (PSMA2), a component of the proteasome, implicated in SARS-CoV-2 replication, and its encoding gene ( PSMA2 ). Additionally, we can identify the drug carfilzomib, a known inhibitor of the proteasome that could therefore be researched as a potential treatment for patients with Covid-19. By examining these specific relationships and their attributes, we can further investigate any connected biological components and better understand their inter-relations. This helps researchers to efficiently study the mechanisms of protein interactions, infections, the immune response, and help to find targets for the development of treatments or drugs more efficiently. We can also expand our search to include contextual informati","default_branch":null,"files":null,"tree":[],"storefront":"/r/typedb-osi","claimed":false,"request_supported":{"post":"https://gitbuyer.com/r/typedb-osi/typedb-bio/request-supported","requests":0},"note":"indexed from public GitHub; nothing is for sale on this page. Clone it from GitHub. Paid listings live at /search."}