{"repo":"tlambert03/FPbase","free":true,"listed":false,"github":"https://github.com/tlambert03/FPbase","clone":"git clone https://github.com/tlambert03/FPbase.git","description":"The Fluorescent Protein Database","language":"Python","stars":82,"topics":["database","fluorescence","microscopy"],"license":"GPL-3.0","category":"databases-storage","readme_excerpt":"FPbase: The Fluorescent Protein Database Source code for Documentation and info on using the site: . See also: Using FPbase: The Fluorescent Protein Database (2023) Methods Mol Biol . 2023;2564:1-45. doi: 10.1007/978-1-0716-2667-2 1 [!TIP] If you're looking for the python API, see https://github.com/tlambert03/fpbasepy Installation for local development 1. Clone repo and cd into directory 1. Create/activate environment using python 3.13 with pipenv/virtualenv/conda 1. Install python requirements for local development 1. Make sure that you have postgres installed. On macOS, with homebrew: 1. Install Node.js & pnpm (homebrew: brew install node ) 1. Install frontend requirements 1. Install a local postgreSQL database (for mac: postgres.app) 1. Create database, and apply migrations 1. start dev servers: You should be able to access the site at . How to cite FPbase If you have used FPbase in a publication, or are referencing an FPbase protein collection or microscope in your methods, please cite the following paper: Lambert, TJ (2019) FPbase: a community-editable fluorescent protein database. Nature Methods . doi: 10.1038/s41592-019-0352-8 Contributing If you would like to contribute to the website directly (for instance, to add a feature or fix an error), please branch off of develop and submit a pull request. If you have data that you would like to contribute to the database, please do not do that here. All data can be submitted directly on the website: Submit a fluorescent prot","default_branch":null,"files":null,"tree":[],"storefront":"/r/tlambert03","claimed":false,"request_supported":{"post":"https://gitbuyer.com/r/tlambert03/FPbase/request-supported","requests":0},"note":"indexed from public GitHub; nothing is for sale on this page. Clone it from GitHub. Paid listings live at /search."}