{"repo":"theosanderson/taxonium","free":true,"listed":false,"github":"https://github.com/theosanderson/taxonium","clone":"git clone https://github.com/theosanderson/taxonium.git","description":"A tool for exploring large trees in the browser","language":"TypeScript","stars":133,"topics":["phylogenetics","phylogeny","tree","deckgl","react","virus"],"license":"GPL-3.0","category":"ui-components","readme_excerpt":"Taxonium Taxonium is a tool for exploring trees, including those with millions of nodes. ➡️ Launch Taxonium 📚 Consult the documentation 📝 Read the paper How do I.. visualise my own Newick phylogeny? Upload a Newick file to Taxonium.org, and optionally a metadata file in CSV or TSV format. If using a metadata file the leftmost column must contain names of the nodes as in the tree. explore the global SARS-CoV-2 phylogeny? Visit Cov2Tree.org which uses Taxonium to allow you to explore a tree built by researchers at UCSC using public data contributed by researchers across the world to the INSDC databases. build my own mutation-annotated tree to explore in Taxonium, or add my own metadata to an existing phylogeny? Use UShER to build a mutation-annotated tree. Then use taxoniumtools to convert it to a Taxonium format you can upload to the interface at Taxonium.org You can also use taxoniumtools to add your own metadata to the existing public phylogeny. Find out more in 📚 the documentation. load really huge trees? For trees larger than about 6M tips, loading local trees in the browser at Taxonium.org can be unreliable on some systems due to browser memory limitations. To avoid these issues, use the Taxonium desktop app. use Taxonium in my own web application? Use the Taxonium component. See Taxonium in action - Cov2Tree - (the repo that runs this is here) - Exploring the NCBI Taxonomy - Serratus (click Tree Viewer on any tree) Citing Taxonium N.B. If you are citing the tree displ","default_branch":null,"files":null,"tree":[],"storefront":"/r/theosanderson","claimed":false,"request_supported":{"post":"https://gitbuyer.com/r/theosanderson/taxonium/request-supported","requests":0},"note":"indexed from public GitHub; nothing is for sale on this page. Clone it from GitHub. Paid listings live at /search."}