{"repo":"selbouhaddani/OmicsPLS","free":true,"listed":false,"github":"https://github.com/selbouhaddani/OmicsPLS","clone":"git clone https://github.com/selbouhaddani/OmicsPLS.git","description":"R package for High dimensional data analysis and integration with O2PLS!","language":"HTML","stars":37,"topics":["bioinformatics","biostatistics","omics","multi-omics","data-integration","principal-component-analysis","pca","partial-least-squares-regression","pls","latent-variable-models"],"license":null,"category":"data-pipelines","readme_excerpt":"Data integration with OmicsPLS Welcome to the OmicsPLS package page on Github. OmicsPLS contains an implementation of O2PLS. OmicsPLS is designed for integrating two high dimensional datasets, visualise relationships between the features and inspect groupings across subjects. The OmicsPLS package can be applied in many fields, in particular life sciences. Installing the package Install the package with: install.packages(\"OmicsPLS\") Note that copying the quotation marks can sometimes go wrong, type them yourself to be sure. If that doesn't work, ensure that the required packages are installed ( ggplot2 and parallel ). Otherwise try the development version on this GitHub repo: require(devtools) devtools::install github(\"selbouhaddani/OmicsPLS\") Also, it is likely that in the GitHub version, bug fixes have been incorporated that are found in the CRAN version. Loading OmicsPLS After installing the package, load the functions by typing library(OmicsPLS) Bugs, questions, complaints, etc For questions, complaints, bugs, etc, you can e-mail me ( ) or file an issue here at GitHub. OmicsPLS software article Our software article is published in BMC Bioinformatics! Please see the article for detailed explanation of the methods, functions and real data applications, including a vignette on omics data integration. Citing the package When using the OmicsPLS R package in your research, please cite the corresponding software article by running command citation(\"OmicsPLS\") or copy-paste: el Bo","default_branch":null,"files":null,"tree":[],"storefront":"/r/selbouhaddani","claimed":false,"request_supported":{"post":"https://gitbuyer.com/r/selbouhaddani/OmicsPLS/request-supported","requests":0},"note":"indexed from public GitHub; nothing is for sale on this page. Clone it from GitHub. Paid listings live at /search."}