{"repo":"sapporo-wes/sapporo-service","free":true,"listed":false,"github":"https://github.com/sapporo-wes/sapporo-service","clone":"git clone https://github.com/sapporo-wes/sapporo-service.git","description":"A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specification.","language":"HTML","stars":25,"topics":["bioinfomatics","workflow-management-system","ga4gh-wes","workflow"],"license":"Apache-2.0","category":"workflow-automation","readme_excerpt":"sapporo-service The sapporo-service is a standard implementation of the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specification. WES provides a standardized way to submit, monitor, and retrieve results from computational workflows across different platforms. The service builds on GA4GH WES 1.1.0 with additional capabilities defined in the sapporo-wes-2.1.0 specification, including output file downloads, RO-Crate metadata generation, run deletion, and JWT authentication. Each workflow engine runs inside its own Docker container, so the service does not require any engine-specific installation. Supported Workflow Engines - cwltool - nextflow - Toil - cromwell - snakemake - ep3 - StreamFlow Quick Start See the Getting Started guide for a complete walkthrough including workflow submission. Documentation Full documentation is available at . - Getting Started - First-time tutorial: start the service, submit a workflow, retrieve results - Installation - Install with pip or Docker, volume mount configuration - Configuration - CLI options, environment variables, executable workflows - WES Compatibility - GA4GH WES 1.1.0 and sapporo-wes 2.x compatibility matrix - Authentication - JWT authentication, sapporo/external mode - Architecture - run.sh abstraction, run directory, SQLite, RO-Crate, code structure - RO-Crate - RO-Crate metadata generation specification - Development - Development environment, testing, release process - Agent Skill - LLM","default_branch":null,"files":null,"tree":[],"storefront":"/r/sapporo-wes","claimed":false,"request_supported":{"post":"https://gitbuyer.com/r/sapporo-wes/sapporo-service/request-supported","requests":0},"note":"indexed from public GitHub; nothing is for sale on this page. Clone it from GitHub. Paid listings live at /search."}