{"repo":"rafiattrach/m3","free":true,"listed":false,"github":"https://github.com/rafiattrach/m3","clone":"git clone https://github.com/rafiattrach/m3.git","description":"🏥🤖 Query MIMIC-IV medical data using natural language through Model Context Protocol (MCP). Transform healthcare research with AI-powered database interactions - supports both local MIMIC-IV SQLite demo dataset and full BigQuery datasets.","language":"Python","stars":77,"topics":[],"license":"MIT","category":"mcp-servers","readme_excerpt":"M3: MIMIC-IV + MCP + Models 🏥🤖 Query MIMIC-IV medical data using natural language through MCP clients Transform medical data analysis with AI! Ask questions about MIMIC-IV data in plain English and get instant insights. Choose between local demo data (free) or full cloud dataset (BigQuery). Features - 🔍 Natural Language Queries : Ask questions about MIMIC-IV data in plain English - 🏠 Local DuckDB + Parquet : Fast local queries for demo and full dataset using Parquet files with DuckDB views - ☁️ BigQuery Support : Access full MIMIC-IV dataset on Google Cloud - 🔒 Enterprise Security : OAuth2 authentication with JWT tokens and rate limiting - 🛡️ SQL Injection Protection : Read-only queries with comprehensive validation 🚀 Quick Start 📺 Prefer video tutorials? Check out step-by-step video guides covering setup, PhysioNet configuration, and more. Install uv (required for uvx ) We use uvx to run the MCP server. Install uv from the official installer, then verify with uv --version . macOS: Linux (or macOS without Homebrew): Windows (PowerShell): Verify installation: BigQuery Setup (Optional - Full Dataset) Skip this if using DuckDB demo database. 1. Install Google Cloud SDK: - macOS: brew install google-cloud-sdk - Windows/Linux: https://cloud.google.com/sdk/docs/install 2. Authenticate: Opens your browser - choose the Google account with BigQuery access to MIMIC-IV. M3 Initialization Supported clients: Claude Desktop, Cursor, Goose, and more. DuckDB (Demo or Full Dataset) To","default_branch":null,"files":null,"tree":[],"storefront":"/r/rafiattrach","claimed":false,"request_supported":{"post":"https://gitbuyer.com/r/rafiattrach/m3/request-supported","requests":0},"note":"indexed from public GitHub; nothing is for sale on this page. Clone it from GitHub. Paid listings live at /search."}