{"repo":"plantinformatics/pretzel","free":true,"listed":false,"github":"https://github.com/plantinformatics/pretzel","clone":"git clone https://github.com/plantinformatics/pretzel.git","description":"Javascript full-stack framework for Big Data visualisation and analysis","language":"JavaScript","stars":46,"topics":["ember","express","emberjs","expressjs","bioinformatics","big-data","javascript","data-visualization","data-science","open-source"],"license":"GPL-3.0","category":"analytics","readme_excerpt":"What is Pretzel Pretzel is a web-based online framework for the real-time interactive display integration of genetic and genomic datasets. It is built on Ember.js (front end), Loopback.js (back end) and D3.js (visualisation). Get started now The Australian Grains Genebank Strategic Partnership hosts the publicly accessible AGG Pretzel at: https://agg.plantinformatics.io/ This includes the genotype datasets released by the Partnership together with curated datasets that enable users to connect research and breeding knowledge to the AGG. Users can sign up for an account by following the Sign Up links in the top right of the page. Documentation is available at: https://docs.plantinformatics.io/ Pretzel features - Integration of a diverse range of genetic and genomic information - Genetic map and chromosome-scale genomic assembly alignments - Visualisation of genomic features, including genes, markers and QTLs - Genotype data visualisation, filtering, dataset intersection - Searching by feature/marker name or by sequence (when BLAST database set up) - Ability to upload custom datasets by drag and dropping Excel templates - User-defined access controls on uploaded datasets, including sharing to groups of users - Dynamic link to Crop Ontology API for QTL trait definition and visualisation Examples of Pretzel in action Simultaneously investigating genome to genetic map relationships and zooming to specific regions to visualize genomic features IWGSC RefSeq v1.0 genome assembly chrom","default_branch":null,"files":null,"tree":[],"storefront":"/r/plantinformatics","claimed":false,"request_supported":{"post":"https://gitbuyer.com/r/plantinformatics/pretzel/request-supported","requests":0},"note":"indexed from public GitHub; nothing is for sale on this page. Clone it from GitHub. Paid listings live at /search."}