{"repo":"pepijn-devries/ECOTOXr","free":true,"listed":false,"github":"https://github.com/pepijn-devries/ECOTOXr","clone":"git clone https://github.com/pepijn-devries/ECOTOXr.git","description":"R package that creates a local SQLite built (and allows querying) of the US EPA ECOTOX database.","language":"R","stars":15,"topics":["database","data"],"license":"GPL-3.0","category":"databases-storage","readme_excerpt":"ECOTOXr ECOTOXr can be used to explore and analyse data from the US EPA ECOTOX database. More specifically you can: - Build a local SQLite copy of the US EPA ECOTOX database - Search and extract data from the local database - Sanitise raw data from the local database - Use experimental features to search the online dashboards: ECOTOX and CompTox Why use ECOTOXr ? The ECOTOXr package allows you to search and extract data from the ECOTOXicological Knowledgebase and import it directly into R . This will allow you to formalize and document the search- and extract-procedures in R code. This makes it easier to share and reproduce such procedures and its results. As illustrated in the graphical abstract below. Moreover, you can directly apply any statistical analysis offered in R . From De Vries et al. (2024) ; Creative commons Installation Get CRAN version Get development version from r-universe Usage Preparing the database Although ECOTOXr has experimental features to search the online database. The package will reach its full potential when you build a copy of the database on your local machine. Download and build a local copy of the latest ASCII export of the US EPA ECOTOX database Searching the local database for species and substances Once built, you can search the local database for species and substances using different strategies. You can use the build-in search function of this package, or you can write custom queries using either the simple query language (SQL) or dplyr v","default_branch":null,"files":null,"tree":[],"storefront":"/r/pepijn-devries","claimed":false,"request_supported":{"post":"https://gitbuyer.com/r/pepijn-devries/ECOTOXr/request-supported","requests":0},"note":"indexed from public GitHub; nothing is for sale on this page. Clone it from GitHub. Paid listings live at /search."}