{"repo":"ohs-foundation/fhir-data-pipes","free":true,"listed":false,"github":"https://github.com/ohs-foundation/fhir-data-pipes","clone":"git clone https://github.com/ohs-foundation/fhir-data-pipes.git","description":"A collection of tools for extracting FHIR resources and analytics services on top of that data.","language":"Jupyter Notebook","stars":223,"topics":["analytics","etl","fhir-store","apache-beam","parquet","data-pipeline","digital-health","global-health","hl7-fhir","interoperability"],"license":"Apache-2.0","category":"data-pipelines","readme_excerpt":"What is this? This repository includes pipelines to transform data from a FHIR server (like HAPI, GCP FHIR store, or even OpenMRS) using the FHIR format into a data warehouse based on Apache Parquet files, or another FHIR server. There is also a query library in Python to make working with FHIR-based data warehouses simpler. These tools are intended to be generic and eventually work with any FHIR-based data source and data warehouse. Here is the list of main directories with a brief description of their content: - pipelines/ \\ START HERE\\ : Batch pipelines to transform data from a FHIR-based source to an analytics-friendly data warehouse or another FHIR store. - docker/: Docker configurations for various servers/pipelines. - doc/: Documentation for project contributors. See the pipelines README and wiki for usage documentation. - utils/: Various artifacts for setting up an initial database, running pipelines, etc. - dwh/: Query library for working with distributed FHIR-based data warehouses. - bunsen/: A fork of a subset of the Bunsen project which is used to transform FHIR JSON resources to Avro records with SQL-on-FHIR schema. - e2e-tests/: Scripts for testing pipelines end-to-end. NOTE : This was originally started as a collaboration between Google and the OpenMRS community. Contributions This is an open-source project and we welcome contributions. Our development process is also open. We use GitHub issues and review processes. If you are working on a feature or an issue, ","default_branch":null,"files":null,"tree":[],"storefront":"/r/ohs-foundation","claimed":false,"request_supported":{"post":"https://gitbuyer.com/r/ohs-foundation/fhir-data-pipes/request-supported","requests":0},"note":"indexed from public GitHub; nothing is for sale on this page. Clone it from GitHub. Paid listings live at /search."}