{"repo":"nf-core/gwas","free":true,"listed":false,"github":"https://github.com/nf-core/gwas","clone":"git clone https://github.com/nf-core/gwas.git","description":"UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies","language":"Nextflow","stars":28,"topics":["nf-core","nextflow","workflow","pipeline","gwas"],"license":"MIT","category":"workflow-automation","readme_excerpt":"Introduction nf-core/gwas is a bioinformatics pipeline that ... 2. Present QC for raw reads ( MultiQC ) Usage [!NOTE] If you are new to Nextflow and nf-core, please refer to this page on how to set-up Nextflow. Make sure to test your setup with -profile test before running the workflow on actual data. Now, you can run the pipeline using: [!WARNING] Please provide pipeline parameters via the CLI or Nextflow -params-file option. Custom config files including those provided by the -c Nextflow option can be used to provide any configuration except for parameters ; see docs. For more details and further functionality, please refer to the usage documentation and the parameter documentation. Pipeline output To see the results of an example test run with a full size dataset refer to the results tab on the nf-core website pipeline page. For more details about the output files and reports, please refer to the output documentation. Credits nf-core/gwas was originally written by Chris Wyatt, Fernando Duarte, Maxime Laurent. We thank the following people for their extensive assistance in the development of this pipeline: Contributions and Support If you would like to contribute to this pipeline, please see the contributing guidelines. For further information or help, don't hesitate to get in touch on the Slack #gwas channel (you can join with this invite). Citations An extensive list of references for the tools used by the pipeline can be found in the CITATIONS.md file. You can cite the n","default_branch":null,"files":null,"tree":[],"storefront":"/r/nf-core","claimed":false,"request_supported":{"post":"https://gitbuyer.com/r/nf-core/gwas/request-supported","requests":0},"note":"indexed from public GitHub; nothing is for sale on this page. Clone it from GitHub. Paid listings live at /search."}