{"repo":"monarch-initiative/monochrom","free":true,"listed":false,"github":"https://github.com/monarch-initiative/monochrom","clone":"git clone https://github.com/monarch-initiative/monochrom.git","description":"Standardized identifiers and OWL classes for chromosomes and chromosomal parts across species","language":"Python","stars":15,"topics":["obofoundry","owl","linkml","genomics","chromosomes","etl","monarchinitiative","ai4curation"],"license":null,"category":"data-pipelines","readme_excerpt":"Chromosome Ontology Chromo (abbreviation CHR) is an automatically derived ontology of chrosomosomes are chromosome parts This ontology may eventually be housed at http://obofoundry.org/ontology/chr Currently we use obolibrary PURLs, but this could potentially be changed to e.g. w3ids, depending on discussion re databases in OBO Until this is released, you can browse either: chr.owl -- multiple species in one ontology, with minimal imports merged components -- one file per species, both OWL and YAML About This \"ontology\" is a direct conversion of metadata about chromosomes and chromosome bands obtained from UCSC chromosome and cytoband data Each chromosome and chromosomal region is represented as an OWL class, with the following properties: id/IRI name taxon part-parent coordinates + build aliases and exact mappings (e.g. to NCBI/INSDC as well as ENSEMBL) To browse the schema, see the schema docs See the schema for more details. The use cases for this \"ontology\" are: To provide standardized identifiers and PURLs for chromosomes and chromosome parts To be used as an import to other ontologies; e.g. to define trisomies for diseases To provide a source of nodes in knowledge graphs For text mining purposes As a nexus for mapping efforts where other terminologies have incorporated chrosomes or their parts (NCIT, MESH, etc) This ontology is intended primary as a way to provide ontology edges for classes in disease and phenotype ontologies that must reference chromosomes, e.g. to def","default_branch":null,"files":null,"tree":[],"storefront":"/r/monarch-initiative","claimed":false,"request_supported":{"post":"https://gitbuyer.com/r/monarch-initiative/monochrom/request-supported","requests":0},"note":"indexed from public GitHub; nothing is for sale on this page. Clone it from GitHub. Paid listings live at /search."}