{"repo":"logannye/rosalind","free":true,"listed":false,"github":"https://github.com/logannye/rosalind","clone":"git clone https://github.com/logannye/rosalind.git","description":"Deterministic, resource-governed per-locus genomics analyses with transactional artifacts, receipts, replay, Arrow, and reproducible sharding.","language":"Rust","stars":254,"topics":["bioinformatics","genomics","apache-arrow","deterministic","hpc","reproducibility","reproducible-research","research-software","rust","workflow"],"license":"Apache-2.0","category":"workflow-automation","readme_excerpt":"Rosalind Build deterministic genomics analyses that fit the machine—and prove exactly what ran. Rosalind is a Rust SDK and CLI for turning coordinate-sorted short-read alignments into reproducible per-locus artifacts under a declared memory budget. It predicts resource needs before execution, can refuse or govern a run, publishes outputs transactionally, and records content-addressed evidence for offline verification, replay, and causal comparison. Rosalind is for genomics research software engineers, bioinformatics platform engineers, ML/data engineers building feature pipelines, and workflow engineers operating fixed-resource HPC or CI jobs. It is not a clinical diagnostic system, a turnkey interface for wet-lab users, a long-read platform, or a replacement for GATK, DeepVariant, Clair3, or bcftools. The built-in SNV caller is a reference workload used to test the platform contract, not the product's scientific moat. Research use only. Not for diagnostic use. Why use it? Most genomics tools let a scheduler impose a memory limit. Rosalind makes the analysis itself participate in the decision and preserve evidence about it: - Resource confidence: a versioned model predicts peak memory, a declared budget can refuse the run before destination creation, and cooperative or cgroup-backed enforcement is recorded distinctly from observation-only runs. - Reproducible artifacts: deterministic ordering, create-new transactional output, canonical receipts, content hashes, tokenized repl","default_branch":null,"files":null,"tree":[],"storefront":"/r/logannye","claimed":false,"request_supported":{"post":"https://gitbuyer.com/r/logannye/rosalind/request-supported","requests":0},"note":"indexed from public GitHub; nothing is for sale on this page. Clone it from GitHub. Paid listings live at /search."}