{"repo":"j-andrews7/CRISPRball","free":true,"listed":false,"github":"https://github.com/j-andrews7/CRISPRball","clone":"git clone https://github.com/j-andrews7/CRISPRball.git","description":"An interactive exploration/visualization platform to help you lift the fog from your CRISPR analyses.","language":"R","stars":13,"topics":["crispr","data-visualization","mageck","r","shiny","interactive-visualizations","plotly","screening","crispr-screen"],"license":"MIT","category":"analytics","readme_excerpt":"Lift the Fog from Your CRISPR Analyses CRISPRball is a Shiny application to explore, visualize, filter, and integrate CRISPR screens with public data and multiple datasets. In particular, it allows for publication-quality figure generation including full aesthetic customization and interactive labeling, filtering of results using DepMap Common Essential genes, simple comparisons between datasets/timepoints/treatments, etc. It is designed for end users and may be particularly useful for bioinformatics/genome editing cores that perform basic analyses before returning results to users. Pointing users to the online version of the app (or a hosted one) will allow them to quickly wade through and interpret their data. Currently, it supports the output from MAGeCK RRA and MLE analysis methods. This package supplements the MAGeCKFlute package, adding additional functionality, visualizations, and a Shiny interface. Support for the output of additional analysis tools and methods will be added upon request. Installation CRISPRball is available on Bioconductor and can be installed using the following commands: Usage Starting the app is as simple as calling the CRISPRball function. Users can then upload their data within the app, which will enable specific tabs in the application as the data is provided. One can also pass their input data directly as input - all that are needed are file paths to the MAGeCK output files. Passing data directly can be useful when hosting the app on a local S","default_branch":null,"files":null,"tree":[],"storefront":"/r/j-andrews7","claimed":false,"request_supported":{"post":"https://gitbuyer.com/r/j-andrews7/CRISPRball/request-supported","requests":0},"note":"indexed from public GitHub; nothing is for sale on this page. Clone it from GitHub. Paid listings live at /search."}