{"repo":"inutano/chip-atlas","free":true,"listed":false,"github":"https://github.com/inutano/chip-atlas","clone":"git clone https://github.com/inutano/chip-atlas.git","description":"ChIP-Atlas: Browse and analyze all public ChIP/DNase-seq data on your browser","language":"CSS","stars":85,"topics":["bioinformatics","database","data-analysis"],"license":"MIT","category":"databases-storage","readme_excerpt":"ChIP-Atlas ChIP-Atlas is a database collecting the bed files calculated from the ChIP-Seq, DNase-Seq, ATAC-Seq, and Bisulfite-seq data archived in Sequence Read Archive (SRA). The database has a web interface to explore the analysis results from the calculated peak call data. This repository contains the webapp code and the documentation of the database. Downtime of Enrichment Analysis and Diff Analysis function ChIP-Atlas is providing online analysis function on ChIP-Atlas - Enrichment Analysis and Diff Analysis. The background calculation relies on the NIG supercomputer system, hosted by DNA Data Bank of Japan, National Institute of Genetics, while the webapp is hosted on its own cloud instance. Therefore, Enrichment Analysis may go down during the maintenance of the NIG supercomputer system. We announce when the function goes down, but if you encountered any trouble other than that period, please inform us from the issue page. Data availability Processed data including the peak-call data in bed, bigBed or bigWig format is available to download via web application interface (example). We also provide the bulk download via LSDB Archive maintained by the National Bioscience Database Center. We provide individual bed/wig data for each experiment and data assembled by the curated metadata. See more details in Wiki. History - Added Annotation tracks to Peak Browser, together with UI improvement (2023/10/25) - Launched Diff Analysis tool enabling to detect differential peaks or d","default_branch":null,"files":null,"tree":[],"storefront":"/r/inutano","claimed":false,"request_supported":{"post":"https://gitbuyer.com/r/inutano/chip-atlas/request-supported","requests":0},"note":"indexed from public GitHub; nothing is for sale on this page. Clone it from GitHub. Paid listings live at /search."}