{"repo":"htlin222/meta-pipe","free":true,"listed":false,"github":"https://github.com/htlin222/meta-pipe","clone":"git clone https://github.com/htlin222/meta-pipe.git","description":"Claude Code-powered end-to-end meta-analysis automation: AI-assisted literature review, screening, extraction, analysis, and manuscript generation for systematic reviews and clinical evidence synthesis","language":"Python","stars":119,"topics":["clinical-research","evidence-based-medicine","meta-analysis","python","reproducible-research","systematic-review","biostatistics","claude-code","clinical-trials","data-extraction"],"license":null,"category":"workflow-automation","readme_excerpt":"Meta-Analysis Pipeline AI-assisted, end-to-end meta-analysis with reproducible tooling. From research question to manuscript-ready output -- powered by Claude Code. --- Quick Start \"Start project my-meta-analysis\" or \"See projects/my-meta-analysis/TOPIC.txt and start\" That's it. Claude will handle the rest. Don't have a topic yet? Say: \"Help me brainstorm a topic\" Claude will guide you through an interactive session to develop your research question and create the project for you. --- What Claude Does 1. Creates your project in projects/ / 2. Reads your topic from projects/ /TOPIC.txt 3. Asks clarifying questions (databases, outcomes, dates) 4. Runs the 9-stage pipeline automatically 5. Generates manuscript-ready outputs Pipeline Overview All stages are created inside projects/ / : Stage Output ------------- ------------------------- 01 protocol pico.yaml, eligibility.md 02 search dedupe.bib 03 screening decisions.csv 04 fulltext manifest.csv 05 extraction extraction.csv 06 analysis figures/, tables/ 07 manuscript manuscript.pdf 08 reviews grade summary.md 09 qa final qa report.md --- Example: Completed Project See a real meta-analysis → projects/ici-breast-cancer/ This is a 99% complete meta-analysis on immune checkpoint inhibitors in triple-negative breast cancer: - 5 RCTs, N=2,402 patients - Primary outcome : RR 1.26 (95% CI 1.16-1.37), p=0.0015, ⊕⊕⊕⊕ HIGH quality - Manuscript : 4,921 words (Lancet Oncology compliant) - Time invested : 14 hours (vs 100+ hours manual) Quick","default_branch":null,"files":null,"tree":[],"storefront":"/r/htlin222","claimed":false,"request_supported":{"post":"https://gitbuyer.com/r/htlin222/meta-pipe/request-supported","requests":0},"note":"indexed from public GitHub; nothing is for sale on this page. Clone it from GitHub. Paid listings live at /search."}