{"repo":"gosling-lang/geranium","free":true,"listed":false,"github":"https://github.com/gosling-lang/geranium","clone":"git clone https://github.com/gosling-lang/geranium.git","description":"Genomics Visualization Retrieval for Authoring with Multimodality","language":"Jupyter Notebook","stars":18,"topics":["hidivelab","genomics-visualization","multimodal-search","visualization","data-visualization","visualization-retrieval","geranium"],"license":"MIT","category":"analytics","readme_excerpt":"Geranium Geranium Ge nomics Visualization R etrieval for A uthori n g w i th M u lti m odality Citation Publication: H. N. Nguyen, S. L'Yi, T. C. Smits, S. Gao, M. Zitnik and N. Gehlenborg, \"Geranium: Multimodal Retrieval of Genomics Data Visualizations,\" in IEEE Transactions on Visualization and Computer Graphics, doi: 10.1109/TVCG.2026.3683429. Preprint on OSF. Overview Geranium is a multimodal retrieval system that helps researchers efficiently find genomics visualization examples using image, text, or specification-based queries. Search results function as adaptable templates/scaffolds that researchers can modify with their own data and design preferences. Features - Flexible query approaches : Choose your preferred search method - example images, natural language queries, or partial Gosling specification queries for precise visualization retrieval - Adaptable visualization scaffolds : Search results function as modifiable templates, not just static examples - Integrated live editor : Edit and customize retrieved visualizations directly within the application - Triplet output : Each resulting visualization is returned as a triplet of image, text, and its corresponding Gosling specification - Diverse Collection : The collection spans single-view to multi-view visualizations for specialized genomic applications like epigenomics and structural variation analysis Installation The application consists of two components: a server and a client that need to be run separately. Ser","default_branch":null,"files":null,"tree":[],"storefront":"/r/gosling-lang","claimed":false,"request_supported":{"post":"https://gitbuyer.com/r/gosling-lang/geranium/request-supported","requests":0},"note":"indexed from public GitHub; nothing is for sale on this page. Clone it from GitHub. Paid listings live at /search."}