{"repo":"genomoncology/biomcp","free":true,"listed":false,"github":"https://github.com/genomoncology/biomcp","clone":"git clone https://github.com/genomoncology/biomcp.git","description":"BioMCP: Biomedical Model Context Protocol","language":"Rust","stars":595,"topics":["ai","bioinformatics","clinical-trials","genomics","llm","mcp","mcp-server","medical","model-context-protocol","pubmed"],"license":"MIT","category":"mcp-servers","readme_excerpt":"BioMCP One binary. One grammar. Evidence from the biomedical sources you already trust. What is BioMCP? BioMCP is one CLI binary over a single command grammar that reaches 30 trusted biomedical sources (PubMed, ClinVar, ClinicalTrials.gov, OncoKB, Reactome, and more). It is also an MCP (Model Context Protocol) server, so the same tools are available to AI agents such as Claude Code, Codex, and Claude Desktop. BioMCP cuts through the usual biomedical data maze: one query reaches the sources that normally live behind different APIs, identifiers, and search habits. Researchers, clinicians, and agents use the same command grammar to search, focus, and pivot without rebuilding the workflow for each source. You get compact, evidence-oriented results across live public data plus local study analytics. Features - Search the literature: search article fans out across PubTator3 and Europe PMC, deduplicates PMID/PMCID/DOI identifiers, and can add a Semantic Scholar leg when your filters support it. - Pivot without rework: move from a gene, variant, drug, disease, pathway, protein, or article straight into the next built-in view instead of rebuilding filters by hand. - Choose a playbook: biomcp skill list shows shipped worked examples so you can open the matching biomcp skill workflow. - Analyze studies locally: study commands cover local query, cohort, survival, compare, and co-occurrence workflows with native terminal, SVG, and PNG charts for downloaded cBioPortal-style datasets. - Fol","default_branch":null,"files":null,"tree":[],"storefront":"/r/genomoncology","claimed":false,"request_supported":{"post":"https://gitbuyer.com/r/genomoncology/biomcp/request-supported","requests":0},"note":"indexed from public GitHub; nothing is for sale on this page. Clone it from GitHub. Paid listings live at /search."}