{"repo":"gdagstn/borges","free":true,"listed":false,"github":"https://github.com/gdagstn/borges","clone":"git clone https://github.com/gdagstn/borges.git","description":"Antique or modern atlas-like depictions of non-linear dimensionality reduction for single cell data","language":"R","stars":18,"topics":["data-visualization","single-cell"],"license":null,"category":"analytics","readme_excerpt":"borges Of Exactitude in Science ...In that Empire, the craft of Cartography attained such Perfection that the Map of a Single province covered the space of an entire City, and the Map of the Empire itself an entire Province. In the course of Time, these Extensive maps were found somehow wanting, and so the College of Cartographers evolved a Map of the Empire that was of the same Scale as the Empire and that coincided with it point for point. Less attentive to the Study of Cartography, succeeding Generations came to judge a map of such Magnitude cumbersome, and, not without Irreverence, they abandoned it to the Rigours of sun and Rain. In the western Deserts, tattered Fragments of the Map are still to be found, Sheltering an occasional Beast or beggar; in the whole Nation, no other relic is left of the Discipline of Geography. ---From Travels of Praiseworthy Men (1658) by J. A. Suarez Miranda borges is a small data visualization package that allows you to plot your single cell RNA-seq dataset (or any other dataset) as an antique or modern cartographic atlas. It uses 2D coordinates - be it UMAP, tSNE, PCA or anything else - and depicts group labels as continuous territories in an ocean, separated by rivers or seas. This is all done through the use of oveRlay , ggplot2 and a few other libraries. borges is still very much under development so any feedback (especially bug reports) is more than welcome. Wait, should I take this seriously? If you are trying to represent high-dimensi","default_branch":null,"files":null,"tree":[],"storefront":"/r/gdagstn","claimed":false,"request_supported":{"post":"https://gitbuyer.com/r/gdagstn/borges/request-supported","requests":0},"note":"indexed from public GitHub; nothing is for sale on this page. Clone it from GitHub. Paid listings live at /search."}