{"repo":"federicomarini/GeneTonic","free":true,"listed":false,"github":"https://github.com/federicomarini/GeneTonic","clone":"git clone https://github.com/federicomarini/GeneTonic.git","description":"Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail","language":"R","stars":83,"topics":["rna-seq-data","rna-seq-analysis","transcriptomics","r","shiny","transcriptome","reproducible-research","gui","user-friendly","bioconductor"],"license":null,"category":"analytics","readme_excerpt":"GeneTonic The goal of GeneTonic is to analyze and integrate the results from Differential Expression analysis and functional enrichment analysis. This package provides a Shiny application that aims to combine at different levels the existing pieces of the transcriptome data and results, in a way that makes it easier to generate insightful observations and hypothesis - combining the benefits of interactivity and reproducibility, e.g. by capturing the features and gene sets of interest highlighted during the live session, and creating an HTML report as an artifact where text, code, and output coexist. GeneTonic can be found on Bioconductor ( ). If you use GeneTonic in your work, please refer to the original publication :page facing up: on BMC Bioinformatics ( , doi: 10.1186/s12859-021-04461-5). A preprint :page facing up: on GeneTonic is available on bioRxiv at . Installation You can install the development version of GeneTonic from GitHub with: Example This is a basic example which shows you how to use GeneTonic on a demo dataset (the one included in the macrophage package). Usage overview You can find the rendered version of the documentation of GeneTonic at the project website , created with pkgdown . Sneak peek? Please visit to see a small demo instance running, on the macrophage dataset. Development If you encounter a bug, have usage questions, or want to share ideas and functionality to make this package better, feel free to file an issue. Code of Conduct Please note that","default_branch":null,"files":null,"tree":[],"storefront":"/r/federicomarini","claimed":false,"request_supported":{"post":"https://gitbuyer.com/r/federicomarini/GeneTonic/request-supported","requests":0},"note":"indexed from public GitHub; nothing is for sale on this page. Clone it from GitHub. Paid listings live at /search."}