{"repo":"epigen/unsupervised_analysis","free":true,"listed":false,"github":"https://github.com/epigen/unsupervised_analysis","clone":"git clone https://github.com/epigen/unsupervised_analysis.git","description":"A general purpose Snakemake workflow and MrBiomics module to perform unsupervised analyses (dimensionality reduction & cluster analysis) and visualizations of high-dimensional data.","language":"Python","stars":67,"topics":["data-science","high-dimensional-data","snakemake","workflow","unsupervised-learning","principal-component-analysis","umap","pca","visualization","clustering"],"license":"MIT","category":"workflow-automation","readme_excerpt":"Unsupervised Analysis Workflow A general purpose Snakemake 8 workflow to perform unsupervised analyses (dimensionality reduction and cluster analysis) on and visualizations of high-dimensional data. [!NOTE] This workflow adheres to the module specifications of MrBiomics, an effort to augment research by modularizing (biomedical) data science. For more details, instructions, and modules check out the project's repository. ⭐️ Star and share modules you find valuable 📤 — help others discover them, and guide our focus for future work! [!IMPORTANT] If you use this workflow in a publication, please don't forget to give credit to the authors by citing it using this DOI 10.5281/zenodo.8405360. 🖋️ Authors - Stephan Reichl - Raphael Bednarsky - Andreas Hofer - Christoph Bock 💿 Software This project wouldn't be possible without the following software and their dependencies Software Reference (DOI) :------------: :--------------------------------------------: clusterCrit https://CRAN.R-project.org/package=clusterCrit clustree https://doi.org/10.1093/gigascience/giy083 ComplexHeatmap https://doi.org/10.1093/bioinformatics/btw313 densMAP https://doi.org/10.1038/s41587-020-00801-7 fastcluster https://doi.org/10.18637/jss.v053.i09 ggally https://CRAN.R-project.org/package=GGally ggplot2 https://ggplot2.tidyverse.org/ ggrepel https://CRAN.R-project.org/package=ggrepel igraph https://doi.org/10.5281/zenodo.3630268 leidenalg https://doi.org/10.5281/zenodo.1469356 pandas https://doi.org/10.52","default_branch":null,"files":null,"tree":[],"storefront":"/r/epigen","claimed":false,"request_supported":{"post":"https://gitbuyer.com/r/epigen/unsupervised_analysis/request-supported","requests":0},"note":"indexed from public GitHub; nothing is for sale on this page. Clone it from GitHub. Paid listings live at /search."}