{"repo":"cxli233/ggtraces","free":true,"listed":false,"github":"https://github.com/cxli233/ggtraces","clone":"git clone https://github.com/cxli233/ggtraces.git","description":"A tidyverse and grammar of graphics powered line traces visualizer","language":null,"stars":31,"topics":["chromatogram-traces","data-visualization","r","line-traces"],"license":"MIT","category":"analytics","readme_excerpt":"ggtraces - A tidyverse and grammar of graphics powered line traces visualizer v.1.0.0 release: Author: Chenxin Li, Ph.D., Assistant Professor at Department of Plant Biology, Michigan State University. Contact: lichen27@msu.edu The main goal of this repository is to empower R users such that we can produce publication quality chromatograms with R. Examples and explanations are below. The Scripts/ directory contains .Rmd files that generate the graphics shown below. It requires R, RStudio, and the rmarkdown package. R: R Download RStudio: RStudio Download rmarkdown can be installed using the intall packages interface in RStudio Table of contents 1. Dependencies 2. Required input 3. Functions generated by the workflow 4. Example output 5. Real datasets - LC-MS example - Metagene example 6. Getting started 7. Example script - Load data - Rename columns - Run ggtraces functions - Final touches 8. Comparison of perspectives 9. Additional features - Facet plot - Pherogram Dependencies This is a tidyverse based workflow. Required input The workflow requires the input data to be in the tidy format (each row is an observation, and each column is a variable). It requires the following 3 columns: 1. The column named x , which will be the x axis 2. the column named y , which will be the y axis 3. A sample column that indicates the sample ID of each of the traces. Addition required values: 1. a vector of sample IDs 2. x offset, default = 0.2 3. y offset, default = 0.4 4. number of traces t","default_branch":null,"files":null,"tree":[],"storefront":"/r/cxli233","claimed":false,"request_supported":{"post":"https://gitbuyer.com/r/cxli233/ggtraces/request-supported","requests":0},"note":"indexed from public GitHub; nothing is for sale on this page. Clone it from GitHub. Paid listings live at /search."}