{"repo":"bridgedb/BridgeDb","free":true,"listed":false,"github":"https://github.com/bridgedb/BridgeDb","clone":"git clone https://github.com/bridgedb/BridgeDb.git","description":"The BridgeDb Library source code","language":"Java","stars":37,"topics":["identifier-mapping","bioinformatics","java","bridgedb","database","uri","mysql-backend","hacktoberfest"],"license":"Apache-2.0","category":"databases-storage","readme_excerpt":"BridgeDb ======== BridgeDb is currently tested with Java 11 and higher (3.0.x releases and master branch). Using BridgeDb dependencies --------------------------- The BridgeDb releases are published to Maven Central, which means you can use the BridgeDb JARs without needing to compile BridgeDb. Usage depends on which module you require. The examples below assumes artifact org.bridgedb.bio and version 3.0.31 : For Maven: For Gradle: For Ivy: For Buildr: Compilation ----------- If you've obtained the source code of BridgeDb, you should be able to compile with a simple: When compiling the Java8-compatible components, use the pom-java8.xml file instead, with mvn -f pom-java8.xml . You can find the libraries in the folder called \"target\", in each sublibrary folder (used to be called \"dist\" in ant). If you want to ignore failing tests, e.g. because you are not online, add this option: -Dmaven.test.failure.ignore=true. Furthermore, note that 'mvn clean compile' fails. Command line tools ------------------ The BridgeDb distribution comes with a few command line tools. You can try: Checking for regressions ------------------------ You may want to run the following commands to detect regressions, which is particularly important before starting to make a release: Note that the first call may fail a number of unit tests, like for those of IDMapperCapabilitiesTest . For that one, this is because it is an abstract class that should not actually be run by JUnit as test suite. Note also that","default_branch":null,"files":null,"tree":[],"storefront":"/r/bridgedb","claimed":false,"request_supported":{"post":"https://gitbuyer.com/r/bridgedb/BridgeDb/request-supported","requests":0},"note":"indexed from public GitHub; nothing is for sale on this page. Clone it from GitHub. Paid listings live at /search."}