{"repo":"brendanf/FUNGuildR","free":true,"listed":false,"github":"https://github.com/brendanf/FUNGuildR","clone":"git clone https://github.com/brendanf/FUNGuildR.git","description":"Look Up Guild Information for Fungi in R","language":"R","stars":26,"topics":["funguild","taxonomic-classifications","trait","database","ecological-guilds"],"license":null,"category":"databases-storage","readme_excerpt":"FUNGuildR FUNGuildR is a tool for assigning trait information based on matching to a taxonomic classification, using the FUNGuild database. In normal use, the database is queried for each use, because FUNGuild are continually updated as new information is submitted. However, FUNGuildR also includes functions to download the database and store it as an R object to speed up repeated queries, make queries reproducible over time, and allow local queries without internet access. Installation For the moment, FUNGuildR can only be installed from GitHub. To install, be sure you have installed the devtools package, and then type: Guild assignment The main function is funguild assign() . It takes as its only required argument a data.frame , which should contain a character column named “Taxonomy”. It returns a version of the same data.frame (as a tibble ) with additional columns: taxon : The name of the matched taxon. guid : Globally Unique Identifier for the database record. mbNumber : The MycoBank number of the taxon. taxonomicLevel : A numeric representation of the taxonomic rank; higher numbers are lower ranks. trophicMode : A very general overview of how the organism gets its nutrition; one or more of Saprotroph , Pathotroph , and Symbiotroph . guild : One or more narrower categories for how the organism gets its nutrition. confidenceRanking : The confidence level of the guild assignment; Possible , Probable , or Highly Probable . growthForm : The general growth morphology of the ","default_branch":null,"files":null,"tree":[],"storefront":"/r/brendanf","claimed":false,"request_supported":{"post":"https://gitbuyer.com/r/brendanf/FUNGuildR/request-supported","requests":0},"note":"indexed from public GitHub; nothing is for sale on this page. Clone it from GitHub. Paid listings live at /search."}