{"repo":"bids-standard/pybids","free":true,"listed":false,"github":"https://github.com/bids-standard/pybids","clone":"git clone https://github.com/bids-standard/pybids.git","description":"Python tools for querying and manipulating BIDS datasets.","language":"Python","stars":263,"topics":["bids","python","api"],"license":"MIT","category":"api-integrations-sdks","readme_excerpt":"PyBIDS PyBIDS is a Python library to centralize interactions with datasets conforming BIDS (Brain Imaging Data Structure) format. For more information about BIDS visit https://bids.neuroimaging.io. PyBIDS currently supports Python 3 on POSIX operating systems (including Mac OS). Windows is not officially supported, though most PyBIDS functionality will probably work fine. Installation PyBIDS is most easily installed from pip. To install the latest official release: pip install pybids Or, alternatively via conda: conda install -c conda-forge pybids If you want to live on the bleeding edge, you can install from main: pip install git+https://github.com/bids-standard/pybids.git Dependencies PyBIDS has a number of dependencies. The core querying functionality requires only the BIDS-Validator package. However, most other modules require the core Python neuroimaging stack: numpy , scipy , pandas , and nibabel . The reports module additionally requires num2words . By default, all dependencies will be installed with pybids (if they aren't already available). Usage Get started by checking out the documentation! Or you can start at our tutorial! You can run it interactively without installing anything via binder. Click on the link and then navigate to doc/examples/pybids tutorial.md to explore. Development and testing PyBIDS uses tox to manage testing environments and ensure that the same commands can easily be run locally and in CI. Install tox with: To run tests with standard, minimal","default_branch":null,"files":null,"tree":[],"storefront":"/r/bids-standard","claimed":false,"request_supported":{"post":"https://gitbuyer.com/r/bids-standard/pybids/request-supported","requests":0},"note":"indexed from public GitHub; nothing is for sale on this page. Clone it from GitHub. Paid listings live at /search."}