{"repo":"becavin-lab/bacnet","free":true,"listed":false,"github":"https://github.com/becavin-lab/bacnet","clone":"git clone https://github.com/becavin-lab/bacnet.git","description":"BACNET is a Java based platform to develop website for multi-omics analysis","language":"Java","stars":12,"topics":["bacnet","genomics","data-visualization","transcriptomics","proteomics","listeria","multi-omics","website","bioinformatics"],"license":"GPL-3.0","category":"analytics","readme_excerpt":"BACNET V2 - December 2021 Bacnet is a Java based platform for fast development of ‘personalized’ multiomics website. Bacnet is easy to import, modify and deploy on web server. Bacnet was used already for the development of four websites, two of them being already published Listeriomics (Bécavin et al., 2017), CrisprGo (Rousset et al., 2018). We believe Bacnet is the only platform available which allows to easily create website for sharing and publishing scientific results of specific multiomics analysis, opening the era of ‘personalized omics’. Our platform integrates different type of tools, the three most important being: 1. A table tools for Heatmap drawing and manipulation. 2. Genome viewer for displaying gene expression array ( DNA microarray ), tiling array, and RNA-Seq data along with proteomics and genomics data. This genome viewer is able to load quickly every data using streaming techniques, to zoom through the data from a nucleotide scale to a genome-wide scale, and overlay heterogeneous “omics” data. 3. An expression atlas, inspired from EBI Expression Atlas , for easily design a query based tool which connects every genomics elements (genes, smallRNAs, antisenseRNAs) to the most relevant “omics” data. All these tools are already implemented in Listeriomics website. See the Listeriomics wiki to understand how they work. Bacnet includes four plug-ins which should be imported from the github repository: bacnet.core package for all the necessary tools of the platform","default_branch":null,"files":null,"tree":[],"storefront":"/r/becavin-lab","claimed":false,"request_supported":{"post":"https://gitbuyer.com/r/becavin-lab/bacnet/request-supported","requests":0},"note":"indexed from public GitHub; nothing is for sale on this page. Clone it from GitHub. Paid listings live at /search."}