{"repo":"aehrc/pathling","free":true,"listed":false,"github":"https://github.com/aehrc/pathling","clone":"git clone https://github.com/aehrc/pathling.git","description":"Tools that make it easier to use FHIR and clinical terminology within data analytics, built on Apache Spark.","language":"Java","stars":133,"topics":["standards","fhir","terminology","analytics","spark"],"license":"Apache-2.0","category":"analytics","readme_excerpt":"Pathling is a set of tools that make it easier to use FHIR® and clinical terminology within health data analytics. It is built on Apache Spark, and it implements the SQL on FHIR view specification and the Bulk Data Access implementation guide. Read the documentation → What can it do? Query and transformation of FHIR data FHIR R4 is the dominant standard for exchanging health data. It comes in both JSON or XML formats, and can contain over 140 different types of resources, such as Patient, Observation, Condition, Procedure, and many more. Pathling is capable of reading all the different types of FHIR resources into a format suitable for data analysis tasks. This makes the following things possible: - Creating SQL-friendly views from FHIR data - Transforming data into other formats, such as CSV or Parquet - Performing terminology queries against coded fields within the FHIR data See Data in and out and Running queries for more information. Terminology queries Health data often contains codes from systems such as SNOMED CT, LOINC or ICD. These codes contain a great deal of information about diagnoses, procedures, observations and many other aspects of a patient's clinical record. It is common to group these codes based upon their properties, relationships to other codes, or membership within a pre-defined set. Pathling can automate the task of calling out to a FHIR terminology server to ask questions about the codes within your data. Examples of the types of questions t","default_branch":null,"files":null,"tree":[],"storefront":"/r/aehrc","claimed":false,"request_supported":{"post":"https://gitbuyer.com/r/aehrc/pathling/request-supported","requests":0},"note":"indexed from public GitHub; nothing is for sale on this page. Clone it from GitHub. Paid listings live at /search."}