{"repo":"RADar-AZDelta/Rabbit-in-a-Blender","free":true,"listed":false,"github":"https://github.com/RADar-AZDelta/Rabbit-in-a-Blender","clone":"git clone https://github.com/RADar-AZDelta/Rabbit-in-a-Blender.git","description":"An ETL pipeline to transform your EMP data to OMOP.","language":"Python","stars":18,"topics":["etl-pipeline","ohdsi","omop-cdm","etl","omop"],"license":"GPL-3.0","category":"data-pipelines","readme_excerpt":"Rabbit in a Blender (RiaB) is an ETL pipeline CLI to transform your EMR data to OMOP. Why the name 'Rabbit in a Blender'? It stays in the rabbit theme of the OHDSI tools, and an ETL pipeline is like putting all your data in a blender. No rabbits were harmed during the development of this tool! Introduction Extract-Transform-Load (ETL) processes are very complex and are mainly crafted by highly skilled data engineers. The process of transforming the electronic medical record (EMR) data into the observational medical outcomes partnership (OMOP) common data model (CDM) is no exception. The mapping process of the source values to standard concepts is mostly done by subject matter experts, who lack the knowledge of programming the ETL process. Wouldn’t it be nice if we could drastically simplify the ETL process, so that you don’t need seasoned data engineers to start the OMOP CDM journey. Imagine that you just save your queries, Usagi comma separated value (CSV) text files and custom concept CSV’s on disk, and run a command line interface (CLI) tool that does all the ETL magic automatically. Currently, our ETL process is supported by BigQuery and SQL Server (both on-premise and in Azure). We're open to exploring additional database technologies to serve as backends for our ETL process. Concept The main strength of the CDM is its simplified scheme. This scheme is a relational data model, where each table has a primary key and can have foreign keys to other tables. Because of the re","default_branch":null,"files":null,"tree":[],"storefront":"/r/RADar-AZDelta","claimed":false,"request_supported":{"post":"https://gitbuyer.com/r/RADar-AZDelta/Rabbit-in-a-Blender/request-supported","requests":0},"note":"indexed from public GitHub; nothing is for sale on this page. Clone it from GitHub. Paid listings live at /search."}