{"repo":"OHNLP/omop_mcp","free":true,"listed":false,"github":"https://github.com/OHNLP/omop_mcp","clone":"git clone https://github.com/OHNLP/omop_mcp.git","description":"Model Context Protocol (MCP) server for mapping clinical terminology to Observational Medical Outcomes Partnership (OMOP) concepts using Large Language Models","language":"Python","stars":40,"topics":["ai-agents","healthcare","mcp-server","omop-cdm","ohdsi"],"license":null,"category":"mcp-servers","readme_excerpt":"OMOP MCP Server Model Context Protocol (MCP) server for mapping clinical terminology to Observational Medical Outcomes Partnership (OMOP) concepts using Large Language Models (LLMs). The vocabulary API is supported by OMOP HUB , and you can obtain an API key from omophub.com. Demo Website Overview This server provides an agentic framework to standardize medical terms into the OMOP Common Data Model (CDM). It uses the OMOPHub API for vocabulary searching, concept suggestion, and terminology mapping. Installation Before configuring the MCP server, ensure you have: 1. uv installed on your system - Install from: https://docs.astral.sh/uv/getting-started/installation/ 2. Clone the repository 3. Set up environment variables Copy .env.template to .env and fill in your API credentials. You will need both an LLM provider key and an OMOPHUB API KEY (for vocabulary lookups). Configuration for Claude Desktop Add the following configuration to your claude desktop config.json file: Location: - MacOS: /Library/Application\\ Support/Claude/claude desktop config.json - Windows: %APPDATA%/Claude/claude desktop config.json Configuration: Replace with the actual path to your cloned repository. Features The OMOP MCP server provides tools and resources for: - Mapping clinical terminology : Intelligent mapping of free-text terms to standardized OMOP concepts. - Vocabulary Search : Direct access to OMOP vocabulary via find omop concept . - Batch Processing : Tool for mapping multiple concepts from a ","default_branch":null,"files":null,"tree":[],"storefront":"/r/OHNLP","claimed":false,"request_supported":{"post":"https://gitbuyer.com/r/OHNLP/omop_mcp/request-supported","requests":0},"note":"indexed from public GitHub; nothing is for sale on this page. Clone it from GitHub. Paid listings live at /search."}