{"repo":"NBISweden/Genome_Annotation_workflow","free":true,"listed":false,"github":"https://github.com/NBISweden/Genome_Annotation_workflow","clone":"git clone https://github.com/NBISweden/Genome_Annotation_workflow.git","description":"A set of workflows written in Nextflow for Genome Annotation.","language":"Nextflow","stars":46,"topics":["genome-annotation","nextflow","workflow"],"license":"GPL-3.0","category":"workflow-automation","readme_excerpt":"NBIS Annotation service pipelines Table of Contents Overview Citation Installation and Usage Overview This Nextflow workflow is a compilation of several subworkflows for different stages of genome annotation. Specifically: Annotation preprocessing Transcript assembly Abinitio Training Functional annotation where the overall genome annotation process is: The subworkflow is selected using the subworkflow parameter. Citation If you use these pipelines in your work, please acknowledge NBIS within your communication according to this example: \"Support by NBIS (National Bioinformatics Infrastructure Sweden) is gratefully acknowledged.\" Acknowledgments These workflows were based on the Bpipe workflows written by Marc Höppner (\\@marchoeppner) and Jacques Dainat (\\@Juke34). Thank you to everyone who contributes to this project. Maintainers Mahesh Binzer-Panchal (\\@mahesh-panchal) Expertise : Nextflow workflow development Jacques Dainat (\\@Juke34) Expertise : Genome annotation, Nextflow workflow development Lucile Soler (\\@LucileSol) Expertise : Genome Annotation Installation and Usage Requirements: Nextflow A container platform (recommended) such as Singularity or Docker, or the conda/mamba package manager if a container platform is not available. If containers or conda/mamba are unavailable, then tool dependencies must be accessible from your PATH . Nextflow Install Nextflow directly: Alternatively, installation can be managed with conda (or mamba) in it's own conda environment: See ","default_branch":null,"files":null,"tree":[],"storefront":"/r/NBISweden","claimed":false,"request_supported":{"post":"https://gitbuyer.com/r/NBISweden/Genome_Annotation_workflow/request-supported","requests":0},"note":"indexed from public GitHub; nothing is for sale on this page. Clone it from GitHub. Paid listings live at /search."}