{"repo":"Jpickard1/BRAD","free":true,"listed":false,"github":"https://github.com/Jpickard1/BRAD","clone":"git clone https://github.com/Jpickard1/BRAD.git","description":"Bioinformatics Retrieval Augmented Digital (BRAD) Assistant - A LLM powered agent for bioinformatics 🤖","language":"Python","stars":63,"topics":["agentic","chat","chat-application","chatbot","gpt","llm-agent","retrieval-augmented-generation","brad"],"license":"MIT","category":"ai-agents","readme_excerpt":"Bioinformatics Retrieval Augmented Digital (BRAD) Assistant 📢 Update (May 2025): Our manuscript, Automatic biomarker discovery and enrichment with BRAD, is now published in Bioinformatics . BRAD is a digital assistant designed to streamline bioinformatics workflows by leveraging the power of Large Language Models (LLMs). Built as a Python package, BRAD integrates computational tools, databases, and scientific literature into a unified system, enabling information retrieval and workflow automation. BRAD supports retrieval-augmented generation (RAG), database integration, executing external codes, and provides flexibility to integrate new tools. BRAD is a Python package and Graphical User Interface, and not dependent on a specific LLM. Scope of this README This README is intended as a quick reference for installing, setting up, and a few examples of the BRAD software. For additional information about this project, see the main page available here and for implementation and configuration details regarding how the software works, consult the software manual here. System Requirements: Any machine capable of running Docker should be able to run BRAD. This includes Windows, MAC, and Linux machines. BRAD was tested on the following operating systems: - Windows 11 Enterprise, 22H2 - Ubuntu 22.04.4 LTS - and several others The GUI does not have significant compute requirements, and has been tested on systems with 16 GB of RAM. If a user installs the Python version or the development v","default_branch":null,"files":null,"tree":[],"storefront":"/r/Jpickard1","claimed":false,"request_supported":{"post":"https://gitbuyer.com/r/Jpickard1/BRAD/request-supported","requests":0},"note":"indexed from public GitHub; nothing is for sale on this page. Clone it from GitHub. Paid listings live at /search."}