{"repo":"BioDataFuse/pyBiodatafuse","free":true,"listed":false,"github":"https://github.com/BioDataFuse/pyBiodatafuse","clone":"git clone https://github.com/BioDataFuse/pyBiodatafuse.git","description":"Python package for biodatafuse project.","language":"Python","stars":15,"topics":["biomedical","data-integration","data-mining","graph-algorithms","graphs","knowledge-graph","rdf"],"license":"MIT","category":"data-pipelines","readme_excerpt":"pyBioDataFuse 💪 Getting Started We introduce BioDataFuse, a query-based Python tool for seamless integration of biomedical databases. BioDataFuse establishes a modular framework for efficient data wrangling, enabling context-specific knowledge graph creation and supporting graph-based analyses. With a user-friendly interface, it enables users to dynamically create knowledge graphs from their input data. Supported by a robust Python package, pyBiodatafuse, this tool excels in data harmonization, aggregating diverse sources through modular queries. Moreover, BioDataFuse provides plugin capabilities for Cytoscape and Neo4j, allowing local graph hosting. Ongoing refinements enhance the graph utility through tasks like link prediction, making BioDataFuse a versatile solution for efficient and effective biological data integration. To know more about the package, read our documentation here. Creating your own graph To generate your own graph, check out our tutorial notebook in examples. We support exporting of the graphs in Cytoscape, Neo4J and GraphDB. You can use the following functions: 🚀 Installation The most recent release can be installed from PyPI with: The most recent code and data can be installed directly from GitHub with: 👐 Contributing Contributions, whether filing an issue, making a pull request, or forking, are appreciated. See CONTRIBUTING.md for more information on getting involved. 👋 Attribution ⚖️ License The code in this package is licensed under the MIT Lice","default_branch":null,"files":null,"tree":[],"storefront":"/r/BioDataFuse","claimed":false,"request_supported":{"post":"https://gitbuyer.com/r/BioDataFuse/pyBiodatafuse/request-supported","requests":0},"note":"indexed from public GitHub; nothing is for sale on this page. Clone it from GitHub. Paid listings live at /search."}