{"repo":"BU-ISCIII/iskylims","free":true,"listed":false,"github":"https://github.com/BU-ISCIII/iskylims","clone":"git clone https://github.com/BU-ISCIII/iskylims.git","description":"is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.","language":"Python","stars":94,"topics":["bioinformatics-analysis","lims","workflow","ngs-analysis","ngs","ngs-data"],"license":"GPL-3.0","category":"workflow-automation","readme_excerpt":"iSkyLIMS The introduction of massive sequencing (MS) in genomics facilities has meant an exponential growth in data generation, requiring a precise tracking system, from library preparation to fastq file generation, analysis and delivery to the researcher. Software designed to handle those tasks are called Laboratory Information Management Systems (LIMS), and its software has to be adapted to their own genomics laboratory particular needs. iSkyLIMS is born with the aim of helping with the wet laboratory tasks, and implementing a workflow that guides genomics labs on their activities from library preparation to data production, reducing potential errors associated to high throughput technology, and facilitating the quality control of the sequencing. Also, iSkyLIMS connects the wet lab with dry lab facilitating data analysis by bioinformaticians. According to existent infrastructure sequencing is performed on an Illumina NextSeq instrument. Data is stored in NetApp mass storage device and fastq files are generated (bcl2fastq) on a Sun Grid Engine High Performance Computing cluster (SGE-HPC). Application servers run web applications for bioinformatics analysis (GALAXY), the iSkyLIMS app, and host the MySQL information tier. iSkyLIMS WetLab workflow deals with sequencing run tracking and statistics. Run tracking passes through five states: \"recorded” genomics user record the new sequencing run into the system, the process will wait till run is completed by the machine and data is","default_branch":null,"files":null,"tree":[],"storefront":"/r/BU-ISCIII","claimed":false,"request_supported":{"post":"https://gitbuyer.com/r/BU-ISCIII/iskylims/request-supported","requests":0},"note":"indexed from public GitHub; nothing is for sale on this page. Clone it from GitHub. Paid listings live at /search."}