{"repo":"AllenInstitute/scrattch.vis","free":true,"listed":false,"github":"https://github.com/AllenInstitute/scrattch.vis","clone":"git clone https://github.com/AllenInstitute/scrattch.vis.git","description":"scRNA-seq data visualization from scrattch","language":"R","stars":30,"topics":["r","scrattch","data-visualization","transcriptomics"],"license":null,"category":"analytics","readme_excerpt":"scrattch.vis Single-cell RNA-seq visualization tools. This package is under heavy development and optimization. Installation All of the dependencies for scrattch.vis are available from CRAN. You can install scrattch.vis from Github using: Plot Types Once installed, scrattch.vis provides a variety of functions for visualizing scRNA-seq data based on sample annotations. Each of these returns a ggplot2 plot object: Load packages and data: Sample-centric plots: sample bar plot() sample heatmap plot() sample fire plot() Group-centric plots: group violin plot() group quasirandom plot() group dot plot() group box plot() group heatmap plot() The scrattch suite scrattch.vis is one component of the scrattch suite of packages for Single Cell RNA-seq Analysis for Transcriptomic Type CHaracterization from the Allen Institute. License The license for this package is available on Github at: https://github.com/AllenInstitute/scrattch.vis/blob/master/LICENSE Level of Support We are planning on occasional updating this tool with no fixed schedule. Community involvement is encouraged through both issues and pull requests. Contribution Agreement If you contribute code to this repository through pull requests or other mechanisms, you are subject to the Allen Institute Contribution Agreement, which is available in full at: https://github.com/AllenInstitute/scrattch.vis/blob/master/CONTRIBUTION","default_branch":null,"files":null,"tree":[],"storefront":"/r/AllenInstitute","claimed":false,"request_supported":{"post":"https://gitbuyer.com/r/AllenInstitute/scrattch.vis/request-supported","requests":0},"note":"indexed from public GitHub; nothing is for sale on this page. Clone it from GitHub. Paid listings live at /search."}