{"repo":"AllenInstitute/openscope_databook","free":true,"listed":false,"github":"https://github.com/AllenInstitute/openscope_databook","clone":"git clone https://github.com/AllenInstitute/openscope_databook.git","description":"OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁🧠🔬🖥️📈","language":"Python","stars":75,"topics":["dandi-archive","data-analysis","data-visualization","nwb","python","reproducible-research","visualization"],"license":null,"category":"analytics","readme_excerpt":"OpenScope Databook The Deployed Databook can be found here: https://alleninstitute.github.io/openscope databook The citeable DOI page on Zenodo: The OpenScope Databook is meant to store code and documentation used for reproducible brain data analysis and visualization, primarily working with NWB files and the DANDI archive. It is provided by the Allen Institute's OpenScope Project, a component of The Allen Institute for Neural Dynamics. OpenScope is a platform for high-throughput and reproducible neurophysiology open to external scientists to test theories of brain function. Through Jupyter Book, this code is structured as a series of documented Jupyter notebooks intended to explain and educate users on how to work with brain data. We are releasing this code to the public as a tool we expect others to use and are actively updating and maintaining this project. Issue submissions are encouraged. Questions can be directed to @rcpeene or @jeromelecoq. Below, you can see a working list of the content goals for this databook. We are open to hearing input from users about what types of analysis and visualization might be useful for reproducible neuroscience, particularly when working with the NWB file standard. Environment Setup Prerequisites Before setting up the environment, ensure you have the following installed: - Python 3.13 (check with python --version ) - uv (optional, highly recommended for reproducible builds: python -m pip install uv ) - Node.js & npm (to build the databo","default_branch":null,"files":null,"tree":[],"storefront":"/r/AllenInstitute","claimed":false,"request_supported":{"post":"https://gitbuyer.com/r/AllenInstitute/openscope_databook/request-supported","requests":0},"note":"indexed from public GitHub; nothing is for sale on this page. Clone it from GitHub. Paid listings live at /search."}